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Each package is downloaded from the package archive in the form of a single package file—either an Emacs Lisp source file, or a tar file containing multiple Emacs Lisp source and other files. Package files are automatically retrieved, processed, and disposed of by the Emacs commands that install packages. Normally, you will not need to deal directly with them, unless you are making a package (see Packaging in The Emacs Lisp Reference Manual). Should you ever need to install a package directly from a package file, use the command M-x package-install-file.
Once installed, the contents of a package are placed in a
subdirectory of ~/.emacs.d/elpa/ (you can change the
name of that directory by changing the variable
package-user-dir). The package subdirectory is named
name-version, where
name is the package name and version is its
version string.
In addition to package-user-dir, Emacs looks for
installed packages in the directories listed in
package-directory-list. These directories are meant
for system administrators to make Emacs packages available
system-wide; Emacs itself never installs packages there. The
package subdirectories for package-directory-list
are laid out in the same way as in
package-user-dir.
Deleting a package (see Package Menu) involves
deleting the corresponding package subdirectory. This only works
for packages installed in package-user-dir; if told
to act on a package in a system-wide package directory, the
deletion command signals an error.